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Diaforá: A Visualization Tool for the Comparison of Biological Taxonomies

  • Lilliana Sancho-Chavarría
  • , Carlos Gómez-Soza
  • , Fabian Beck
  • , Erick Mata-Montero

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

2 Scopus citations

Abstract

We address the problem of visualizing differences between two versions of a biological taxonomy. Given the dynamics of the taxonomic work, taxonomists are often faced with alternative versions of a taxonomy that need to be reconciled. Nevertheless, visual comparison of hierarchies is an open problem that involves several difficult challenges in Visual Analytics. First, how to display not one but two possibly large taxonomies on a fixed-size screen. Second, how to highlight all differences between the two taxonomies. We present Diaforá, an interactive tool that infers and visualizes the differences. Automatic inference is achieved by incorporating taxonomy rules to identify operations such as merging, splitting, and renaming of taxa, among others. Highlighting of differences is accomplished by using the edge drawing technique, which has been enhanced with a number of features suggested by users of a prototype version. Diaforá has been implemented and tested with real world taxonomies such as Bryozoa and Annelida as well as with artificial taxonomies.

Original languageEnglish
Title of host publicationHigh Performance Computing - 6th Latin American Conference, CARLA 2019, Revised Selected Papers
EditorsJuan Luis Crespo-Mariño, Esteban Meneses-Rojas
PublisherSpringer
Pages423-437
Number of pages15
ISBN (Print)9783030410049
DOIs
StatePublished - 2020
Event6th Latin American High Performance Computing Conference, CARLA 2019 - Turrialba, Costa Rica
Duration: 25 Sep 201927 Sep 2019

Publication series

NameCommunications in Computer and Information Science
Volume1087 CCIS
ISSN (Print)1865-0929
ISSN (Electronic)1865-0937

Conference

Conference6th Latin American High Performance Computing Conference, CARLA 2019
Country/TerritoryCosta Rica
CityTurrialba
Period25/09/1927/09/19

Keywords

  • Biological taxonomies
  • Hierarchy comparison
  • Information visualization

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